Spinal cord data
Contents
Spinal cord data#
Spinal cord CSA#
Code imports#
# Python imports
from IPython.display import clear_output
from pathlib import Path
import numpy as np
import pandas as pd
# Import custom tools
from tools.data import Data
from tools.plot import Plot
Download data#
data_type = 'spine'
release_version = 'latest'
dataset = Data(data_type)
dataset.download(release_version)
Archive: spinalcord_results.zip
inflating: data/spine/DWI_RD.csv
inflating: data/spine/DWI_FA.csv
inflating: data/spine/csa-SC_T2w.csv
inflating: data/spine/DWI_MD.csv
inflating: data/spine/MTR.csv
inflating: data/spine/MTsat.csv
inflating: data/spine/csa-GM_T2s.csv
inflating: data/spine/csa-SC_T1w.csv
inflating: data/spine/._csa-SC_T1w.csv
inflating: data/spine/T1.csv
--2022-06-14 00:05:36-- https://github.com/courtois-neuromod/anat-processing/releases/download//r20210610/spinalcord_results.zip
Resolving github.com (github.com)... 140.82.114.4
Connecting to github.com (github.com)|140.82.114.4|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/333825187/9e444c00-c9e2-11eb-880c-f9aa2a43f100?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220614%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220614T000536Z&X-Amz-Expires=300&X-Amz-Signature=238f36051ea01c3f5e90af0eedd912c03f7f4e0280c8642b8f16eed6fa829b86&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=333825187&response-content-disposition=attachment%3B%20filename%3Dspinalcord_results.zip&response-content-type=application%2Foctet-stream [following]
--2022-06-14 00:05:36-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/333825187/9e444c00-c9e2-11eb-880c-f9aa2a43f100?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220614%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220614T000536Z&X-Amz-Expires=300&X-Amz-Signature=238f36051ea01c3f5e90af0eedd912c03f7f4e0280c8642b8f16eed6fa829b86&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=333825187&response-content-disposition=attachment%3B%20filename%3Dspinalcord_results.zip&response-content-type=application%2Foctet-stream
Resolving objects.githubusercontent.com (objects.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.110.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 19324 (19K) [application/octet-stream]
Saving to: ‘spinalcord_results.zip’
0K .......... ........ 100% 29.7M=0.001s
2022-06-14 00:05:36 (29.7 MB/s) - ‘spinalcord_results.zip’ saved [19324/19324]
Load data plot it#
dataset.load()
fig_spine = Plot(dataset, plot_name = 'spine-1')
fig_spine.title = 'Spinal cord CSA [T<sub>1</sub>w/T<sub>2</sub>w]'
# If you're running this notebook in a Jupyter Notebook (eg, on MyBinder), change 'jupyter-book' to 'notebook'
fig_spine.display('jupyter-book', tissue = 'WM')
{'T1w': Subject Session Timestamp \
1 1 1 2021-06-09 23:24:10
6 1 2 2021-06-09 23:24:19
0 1 3 2021-06-09 23:24:08
8 2 1 2021-06-09 23:41:15
10 2 2 2021-06-09 23:41:24
15 2 3 2021-06-09 23:50:43
12 2 4 2021-06-09 23:41:39
9 3 1 2021-06-09 23:41:20
13 3 2 2021-06-09 23:41:42
11 3 3 2021-06-09 23:41:39
16 3 4 2021-06-09 23:55:17
17 4 2 2021-06-09 23:55:38
18 4 3 2021-06-09 23:55:53
4 5 1 2021-06-09 23:24:18
14 5 2 2021-06-09 23:41:45
2 6 1 2021-06-09 23:24:11
7 6 2 2021-06-09 23:24:21
5 6 3 2021-06-09 23:24:19
3 6 4 2021-06-09 23:24:12
SCT Version \
1 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
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MEAN(area) STD(area) MEAN(angle_AP) ... STD(diameter_AP) \
1 67.680431 1.598728 -4.254822 ... 0.225578
6 67.511930 1.726861 -6.577358 ... 0.186145
0 64.109061 3.127582 -4.670983 ... 0.464761
8 66.455289 4.204379 0.095829 ... 0.684070
10 73.688109 2.833139 -0.068322 ... 0.406465
15 73.905494 2.073274 -0.691532 ... 0.368828
12 69.405673 4.568637 -0.749008 ... 0.543059
9 59.927681 1.980624 -0.778617 ... 0.334499
13 60.228814 1.776652 -1.464265 ... 0.247391
11 60.621684 1.733616 -0.009478 ... 0.358365
16 59.915665 2.030933 -2.222570 ... 0.296578
17 59.717857 2.220913 2.572138 ... 0.399145
18 61.969221 2.026699 6.989458 ... 0.326731
4 53.010013 11.097434 -1.790824 ... 1.087683
14 64.717972 4.153035 -3.034680 ... 0.567947
2 62.953114 1.769023 -0.646246 ... 0.216321
7 64.823566 18.835219 13.113466 ... 1.159209
5 62.990802 2.049191 -2.338349 ... 0.298265
3 63.925810 2.765595 -1.132526 ... 0.248317
MEAN(diameter_RL) STD(diameter_RL) MEAN(eccentricity) \
1 10.843164 0.307774 0.680936
6 10.874612 0.275935 0.690540
0 10.640776 0.333651 0.690605
8 11.992443 0.585042 0.794791
10 12.065046 0.492764 0.756302
15 12.371408 0.639116 0.780126
12 12.227376 0.665839 0.796428
9 10.086060 0.232852 0.658816
13 10.486967 0.214164 0.716856
11 10.632869 0.308162 0.726909
16 10.445562 0.243935 0.716104
17 10.999128 0.354854 0.775108
18 10.956739 0.419218 0.753243
4 10.965275 0.675722 0.822167
14 11.448594 0.408139 0.769825
2 11.513113 0.470660 0.792890
7 9.503113 2.506067 0.576338
5 11.506661 0.596266 0.792194
3 11.727604 0.490648 0.803257
STD(eccentricity) MEAN(orientation) STD(orientation) MEAN(solidity) \
1 0.039585 2.149545 1.734302 0.980308
6 0.031751 2.855729 1.967201 0.977647
0 0.054994 3.202127 2.184708 0.976971
8 0.061804 2.234122 1.464966 0.963074
10 0.053939 2.367144 1.803792 0.966030
15 0.052688 1.694898 1.187327 0.963111
12 0.053488 2.145301 1.623586 0.958420
9 0.049798 2.475063 1.644264 0.972640
13 0.033921 1.850661 1.538691 0.966100
11 0.049649 1.681134 1.217510 0.970807
16 0.038919 2.551453 2.010580 0.972863
17 0.045832 2.195005 1.555832 0.972639
18 0.040568 2.095929 1.251544 0.976777
4 0.059414 4.036279 2.295310 0.952220
14 0.056204 4.103625 1.847953 0.966696
2 0.029588 1.260913 1.049494 0.965233
7 0.152557 22.042768 32.322329 0.968538
5 0.041279 1.614134 1.158783 0.973527
3 0.028672 1.754369 1.049329 0.971605
STD(solidity) SUM(length)
1 0.009615 36.167347
6 0.008612 32.528253
0 0.007494 34.565242
8 0.016533 31.424022
10 0.009791 32.356730
15 0.014391 30.534960
12 0.020529 31.442066
9 0.009458 28.297791
13 0.007298 27.236579
11 0.010769 28.389363
16 0.010084 28.329492
17 0.015228 29.056988
18 0.009427 28.313078
4 0.027352 33.355815
14 0.012619 32.529064
2 0.014776 30.644730
7 0.032237 10.122137
5 0.010495 31.364216
3 0.012450 31.247426
[19 rows x 24 columns], 'T2w': Subject Session Timestamp \
1 1 1 2021-06-09 23:20:54
4 1 2 2021-06-09 23:21:02
0 1 3 2021-06-09 23:20:52
8 2 1 2021-06-09 23:38:23
10 2 2 2021-06-09 23:38:28
15 2 3 2021-06-09 23:48:42
12 2 4 2021-06-09 23:38:42
9 3 1 2021-06-09 23:38:25
13 3 2 2021-06-09 23:38:46
11 3 3 2021-06-09 23:38:40
16 3 4 2021-06-09 23:53:25
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5 5 1 2021-06-09 23:21:05
14 5 2 2021-06-09 23:38:47
2 6 1 2021-06-09 23:20:55
7 6 2 2021-06-09 23:21:12
6 6 3 2021-06-09 23:21:05
3 6 4 2021-06-09 23:21:00
SCT Version \
1 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
0 git-jca/3413-run-batch-session-c41958db922273a...
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6 /Users/julien/temp/neuromod/data_processed/sub... 166:201 2:3
3 /Users/julien/temp/neuromod/data_processed/sub... 167:203 2:3
MEAN(area) STD(area) MEAN(angle_AP) ... STD(diameter_AP) \
1 80.312877 1.602798 -3.958454 ... 0.148831
4 80.768423 1.967870 -5.074403 ... 0.180384
0 80.774162 3.246713 -3.760068 ... 0.174290
8 92.724125 7.198446 -0.533592 ... 0.500942
10 94.587712 7.628431 -0.855157 ... 0.571808
15 92.666900 8.162162 -0.596256 ... 0.609800
12 93.571468 6.715923 -1.310382 ... 0.499746
9 73.617773 1.283275 -0.176559 ... 0.162039
13 72.980170 1.733563 -0.169089 ... 0.218192
11 70.593648 1.455799 -0.991364 ... 0.267249
16 71.268228 1.688296 0.149827 ... 0.272076
17 74.732375 0.995570 -0.057076 ... 0.173023
18 75.005645 0.909686 4.142686 ... 0.251494
5 70.779953 4.773098 -1.899860 ... 0.773255
14 74.857807 2.759146 -2.745917 ... 0.388765
2 72.958267 2.394267 -0.230000 ... 0.206093
7 73.129881 1.990473 -0.959923 ... 0.223915
6 73.894805 2.227882 0.547178 ... 0.174199
3 72.129244 2.513562 -2.145414 ... 0.180008
MEAN(diameter_RL) STD(diameter_RL) MEAN(eccentricity) \
1 11.899994 0.348936 0.689786
4 11.935064 0.352203 0.692630
0 11.942165 0.386189 0.692055
8 13.469831 0.903365 0.749762
10 13.618790 0.856929 0.751709
15 13.567128 0.933170 0.758917
12 13.510144 0.754180 0.750687
9 11.618506 0.249626 0.719638
13 11.669006 0.227977 0.728585
11 11.246244 0.328627 0.702012
16 11.275181 0.260300 0.698106
17 12.063074 0.345358 0.754853
18 11.967497 0.381923 0.743363
5 12.190368 0.565430 0.779750
14 12.401970 0.406430 0.775455
2 12.298752 0.455764 0.786437
7 12.384761 0.445033 0.792261
6 12.449794 0.470167 0.792112
3 12.327045 0.417297 0.794967
STD(eccentricity) MEAN(orientation) STD(orientation) MEAN(solidity) \
1 0.032309 3.342223 1.895299 0.973535
4 0.031759 2.725679 1.980338 0.974296
0 0.028034 4.826952 2.124976 0.973148
8 0.061652 3.007144 1.340842 0.970252
10 0.060540 2.065212 1.229055 0.970512
15 0.066758 1.366771 1.115320 0.969417
12 0.055164 1.432686 1.105488 0.970806
9 0.026723 1.350991 0.866047 0.970433
13 0.027002 1.021736 0.860224 0.971586
11 0.046127 1.260142 1.145153 0.970805
16 0.041606 1.752418 1.216747 0.975077
17 0.027804 2.550164 1.247343 0.967420
18 0.040588 1.571435 1.604254 0.972454
5 0.071128 3.074997 1.954591 0.956469
14 0.041603 2.156050 1.223840 0.966862
2 0.025628 0.972269 0.813403 0.972373
7 0.026887 1.640786 1.149530 0.970194
6 0.023507 1.604021 1.084022 0.967781
3 0.019853 1.783156 0.920410 0.969491
STD(solidity) SUM(length)
1 0.009511 33.716889
4 0.007769 33.951292
0 0.006615 34.526392
8 0.010245 31.142010
10 0.010239 30.640014
15 0.010025 29.350071
12 0.009661 28.757132
9 0.008960 29.966024
13 0.007557 29.619905
11 0.008657 29.249095
16 0.009043 30.022830
17 0.011174 29.705806
18 0.008886 28.928858
5 0.019386 31.359579
14 0.013124 31.380837
2 0.010028 30.494727
7 0.011049 30.874411
6 0.010371 29.962644
3 0.009872 30.558270
[19 rows x 24 columns], 'GMT2w': Subject Session Timestamp \
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5 1 2 2021-06-09 23:28:30
1 1 3 2021-06-09 23:28:01
8 2 1 2021-06-09 23:44:35
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14 2 3 2021-06-09 23:53:03
11 2 4 2021-06-09 23:45:18
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13 3 2 2021-06-09 23:45:45
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15 3 4 2021-06-09 23:57:39
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2 6 1 2021-06-09 23:28:13
7 6 2 2021-06-09 23:28:34
6 6 3 2021-06-09 23:28:31
3 6 4 2021-06-09 23:28:22
SCT Version \
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4 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
2 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
7 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
6 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
3 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
MEAN(area) STD(area) MEAN(angle_AP) ... STD(diameter_AP) \
0 15.781250 1.371800 0.0 ... 0.283857
5 15.928571 2.034147 0.0 ... 0.312646
1 17.000000 1.752549 0.0 ... 0.437912
8 19.821429 1.360897 0.0 ... 0.417456
9 20.000000 1.077365 0.0 ... 0.342271
14 19.214286 1.605952 0.0 ... 0.487494
11 20.464286 1.397885 0.0 ... 0.322935
10 18.208333 1.933351 0.0 ... 0.218711
13 17.333333 1.624466 0.0 ... 0.157746
12 16.625000 2.452677 0.0 ... 0.185884
15 16.958333 1.758412 0.0 ... 0.238859
16 17.041667 1.417279 0.0 ... 0.193646
17 17.333332 1.455354 0.0 ... 0.309761
4 16.214286 1.848883 0.0 ... 0.490131
2 16.642857 3.600241 0.0 ... 0.556421
7 17.392857 2.182958 0.0 ... 0.433186
6 16.321428 2.020936 0.0 ... 0.451914
3 16.535714 2.707228 0.0 ... 0.719459
MEAN(diameter_RL) STD(diameter_RL) MEAN(eccentricity) \
0 9.157261 0.632701 0.760794
5 8.912826 0.518961 0.755229
1 9.105736 0.577677 0.742294
8 11.544729 0.413976 0.882456
9 11.842302 0.579720 0.879404
14 11.589557 0.509289 0.880191
11 11.748837 0.339294 0.880092
10 9.713868 0.912814 0.809431
13 9.552361 0.850671 0.803472
12 9.541168 0.905707 0.803929
15 9.512255 0.787789 0.809049
16 9.258316 0.625445 0.800148
17 9.310330 0.966440 0.792127
4 9.916864 0.663039 0.848935
2 10.865812 0.972017 0.875254
7 11.029238 0.908874 0.877292
6 10.450533 0.889613 0.879650
3 10.447901 0.631897 0.896789
STD(eccentricity) MEAN(orientation) STD(orientation) MEAN(solidity) \
0 0.065413 9.239814 4.915181 0.398420
5 0.050143 7.501914 6.651370 0.402462
1 0.076859 8.999431 5.426012 0.412780
8 0.015014 2.491855 1.419888 0.400532
9 0.021123 2.516891 2.068491 0.380244
14 0.021772 3.755927 2.144876 0.392944
11 0.017030 1.848681 1.410178 0.390731
10 0.046939 2.111163 1.302024 0.441700
13 0.048638 3.743699 2.736344 0.431054
12 0.050888 3.033851 3.309783 0.423130
15 0.050811 2.475007 0.736044 0.427416
16 0.040699 3.309946 1.876603 0.438293
17 0.067271 5.133278 3.005962 0.452724
4 0.047865 3.056269 2.330227 0.420649
2 0.043939 1.272704 0.738812 0.392086
7 0.037499 1.582275 1.103783 0.406786
6 0.036167 1.582814 1.583200 0.423449
3 0.037479 3.565542 1.894078 0.461639
STD(solidity) SUM(length)
0 0.017171 40.000000
5 0.017327 34.999983
1 0.019752 35.000010
8 0.022981 35.000033
9 0.013678 34.999980
14 0.018671 35.000000
11 0.011656 35.000033
10 0.014227 29.999989
13 0.016436 30.000037
12 0.022843 29.999986
15 0.020870 29.999991
16 0.010648 30.000011
17 0.024747 30.000011
4 0.020092 34.999977
2 0.054614 34.999983
7 0.024975 34.999990
6 0.020716 35.000017
3 0.037115 35.000003
[18 rows x 24 columns]}
Gray matter CSA#
fig_spine = Plot(dataset, plot_name = 'spine-2')
fig_spine.title = 'Spinal cord gray matter CSA'
# If you're running this notebook in a Jupyter Notebook (eg, on MyBinder), change 'jupyter-book' to 'notebook'
fig_spine.display('jupyter-book', tissue = 'GM')
{'T1w': Subject Session Timestamp \
1 1 1 2021-06-09 23:24:10
6 1 2 2021-06-09 23:24:19
0 1 3 2021-06-09 23:24:08
8 2 1 2021-06-09 23:41:15
10 2 2 2021-06-09 23:41:24
15 2 3 2021-06-09 23:50:43
12 2 4 2021-06-09 23:41:39
9 3 1 2021-06-09 23:41:20
13 3 2 2021-06-09 23:41:42
11 3 3 2021-06-09 23:41:39
16 3 4 2021-06-09 23:55:17
17 4 2 2021-06-09 23:55:38
18 4 3 2021-06-09 23:55:53
4 5 1 2021-06-09 23:24:18
14 5 2 2021-06-09 23:41:45
2 6 1 2021-06-09 23:24:11
7 6 2 2021-06-09 23:24:21
5 6 3 2021-06-09 23:24:19
3 6 4 2021-06-09 23:24:12
SCT Version \
1 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
0 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
18 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
1 /Users/julien/temp/neuromod/data_processed/sub... 31:75 2:3
6 /Users/julien/temp/neuromod/data_processed/sub... 47:86 2:3
0 /Users/julien/temp/neuromod/data_processed/sub... 51:93 2:3
8 /Users/julien/temp/neuromod/data_processed/sub... 1:38 2:3
10 /Users/julien/temp/neuromod/data_processed/sub... 12:50 2:3
15 /Users/julien/temp/neuromod/data_processed/sub... 3:39 2:3
12 /Users/julien/temp/neuromod/data_processed/sub... 9:46 2:3
9 /Users/julien/temp/neuromod/data_processed/sub... 51:85 2:3
13 /Users/julien/temp/neuromod/data_processed/sub... 33:66 2:3
11 /Users/julien/temp/neuromod/data_processed/sub... 43:77 2:3
16 /Users/julien/temp/neuromod/data_processed/sub... 40:74 2:3
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4 /Users/julien/temp/neuromod/data_processed/sub... 19:57 2:3
14 /Users/julien/temp/neuromod/data_processed/sub... 44:82 2:3
2 /Users/julien/temp/neuromod/data_processed/sub... 45:81 2:3
7 /Users/julien/temp/neuromod/data_processed/sub... 89:125 2:3
5 /Users/julien/temp/neuromod/data_processed/sub... 38:75 2:3
3 /Users/julien/temp/neuromod/data_processed/sub... 58:95 2:3
MEAN(area) STD(area) MEAN(angle_AP) ... STD(diameter_AP) \
1 67.680431 1.598728 -4.254822 ... 0.225578
6 67.511930 1.726861 -6.577358 ... 0.186145
0 64.109061 3.127582 -4.670983 ... 0.464761
8 66.455289 4.204379 0.095829 ... 0.684070
10 73.688109 2.833139 -0.068322 ... 0.406465
15 73.905494 2.073274 -0.691532 ... 0.368828
12 69.405673 4.568637 -0.749008 ... 0.543059
9 59.927681 1.980624 -0.778617 ... 0.334499
13 60.228814 1.776652 -1.464265 ... 0.247391
11 60.621684 1.733616 -0.009478 ... 0.358365
16 59.915665 2.030933 -2.222570 ... 0.296578
17 59.717857 2.220913 2.572138 ... 0.399145
18 61.969221 2.026699 6.989458 ... 0.326731
4 53.010013 11.097434 -1.790824 ... 1.087683
14 64.717972 4.153035 -3.034680 ... 0.567947
2 62.953114 1.769023 -0.646246 ... 0.216321
7 64.823566 18.835219 13.113466 ... 1.159209
5 62.990802 2.049191 -2.338349 ... 0.298265
3 63.925810 2.765595 -1.132526 ... 0.248317
MEAN(diameter_RL) STD(diameter_RL) MEAN(eccentricity) \
1 10.843164 0.307774 0.680936
6 10.874612 0.275935 0.690540
0 10.640776 0.333651 0.690605
8 11.992443 0.585042 0.794791
10 12.065046 0.492764 0.756302
15 12.371408 0.639116 0.780126
12 12.227376 0.665839 0.796428
9 10.086060 0.232852 0.658816
13 10.486967 0.214164 0.716856
11 10.632869 0.308162 0.726909
16 10.445562 0.243935 0.716104
17 10.999128 0.354854 0.775108
18 10.956739 0.419218 0.753243
4 10.965275 0.675722 0.822167
14 11.448594 0.408139 0.769825
2 11.513113 0.470660 0.792890
7 9.503113 2.506067 0.576338
5 11.506661 0.596266 0.792194
3 11.727604 0.490648 0.803257
STD(eccentricity) MEAN(orientation) STD(orientation) MEAN(solidity) \
1 0.039585 2.149545 1.734302 0.980308
6 0.031751 2.855729 1.967201 0.977647
0 0.054994 3.202127 2.184708 0.976971
8 0.061804 2.234122 1.464966 0.963074
10 0.053939 2.367144 1.803792 0.966030
15 0.052688 1.694898 1.187327 0.963111
12 0.053488 2.145301 1.623586 0.958420
9 0.049798 2.475063 1.644264 0.972640
13 0.033921 1.850661 1.538691 0.966100
11 0.049649 1.681134 1.217510 0.970807
16 0.038919 2.551453 2.010580 0.972863
17 0.045832 2.195005 1.555832 0.972639
18 0.040568 2.095929 1.251544 0.976777
4 0.059414 4.036279 2.295310 0.952220
14 0.056204 4.103625 1.847953 0.966696
2 0.029588 1.260913 1.049494 0.965233
7 0.152557 22.042768 32.322329 0.968538
5 0.041279 1.614134 1.158783 0.973527
3 0.028672 1.754369 1.049329 0.971605
STD(solidity) SUM(length)
1 0.009615 36.167347
6 0.008612 32.528253
0 0.007494 34.565242
8 0.016533 31.424022
10 0.009791 32.356730
15 0.014391 30.534960
12 0.020529 31.442066
9 0.009458 28.297791
13 0.007298 27.236579
11 0.010769 28.389363
16 0.010084 28.329492
17 0.015228 29.056988
18 0.009427 28.313078
4 0.027352 33.355815
14 0.012619 32.529064
2 0.014776 30.644730
7 0.032237 10.122137
5 0.010495 31.364216
3 0.012450 31.247426
[19 rows x 24 columns], 'T2w': Subject Session Timestamp \
1 1 1 2021-06-09 23:20:54
4 1 2 2021-06-09 23:21:02
0 1 3 2021-06-09 23:20:52
8 2 1 2021-06-09 23:38:23
10 2 2 2021-06-09 23:38:28
15 2 3 2021-06-09 23:48:42
12 2 4 2021-06-09 23:38:42
9 3 1 2021-06-09 23:38:25
13 3 2 2021-06-09 23:38:46
11 3 3 2021-06-09 23:38:40
16 3 4 2021-06-09 23:53:25
17 4 2 2021-06-09 23:53:48
18 4 3 2021-06-09 23:54:02
5 5 1 2021-06-09 23:21:05
14 5 2 2021-06-09 23:38:47
2 6 1 2021-06-09 23:20:55
7 6 2 2021-06-09 23:21:12
6 6 3 2021-06-09 23:21:05
3 6 4 2021-06-09 23:21:00
SCT Version \
1 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
0 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
18 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
1 /Users/julien/temp/neuromod/data_processed/sub... 160:201 2:3
4 /Users/julien/temp/neuromod/data_processed/sub... 162:203 2:3
0 /Users/julien/temp/neuromod/data_processed/sub... 161:203 2:3
8 /Users/julien/temp/neuromod/data_processed/sub... 157:193 2:3
10 /Users/julien/temp/neuromod/data_processed/sub... 156:191 2:3
15 /Users/julien/temp/neuromod/data_processed/sub... 159:193 2:3
12 /Users/julien/temp/neuromod/data_processed/sub... 160:193 2:3
9 /Users/julien/temp/neuromod/data_processed/sub... 141:177 2:3
13 /Users/julien/temp/neuromod/data_processed/sub... 162:198 2:3
11 /Users/julien/temp/neuromod/data_processed/sub... 161:196 2:3
16 /Users/julien/temp/neuromod/data_processed/sub... 158:194 2:3
17 /Users/julien/temp/neuromod/data_processed/sub... 164:200 2:3
18 /Users/julien/temp/neuromod/data_processed/sub... 164:199 2:3
5 /Users/julien/temp/neuromod/data_processed/sub... 159:196 2:3
14 /Users/julien/temp/neuromod/data_processed/sub... 154:191 2:3
2 /Users/julien/temp/neuromod/data_processed/sub... 158:194 2:3
7 /Users/julien/temp/neuromod/data_processed/sub... 164:200 2:3
6 /Users/julien/temp/neuromod/data_processed/sub... 166:201 2:3
3 /Users/julien/temp/neuromod/data_processed/sub... 167:203 2:3
MEAN(area) STD(area) MEAN(angle_AP) ... STD(diameter_AP) \
1 80.312877 1.602798 -3.958454 ... 0.148831
4 80.768423 1.967870 -5.074403 ... 0.180384
0 80.774162 3.246713 -3.760068 ... 0.174290
8 92.724125 7.198446 -0.533592 ... 0.500942
10 94.587712 7.628431 -0.855157 ... 0.571808
15 92.666900 8.162162 -0.596256 ... 0.609800
12 93.571468 6.715923 -1.310382 ... 0.499746
9 73.617773 1.283275 -0.176559 ... 0.162039
13 72.980170 1.733563 -0.169089 ... 0.218192
11 70.593648 1.455799 -0.991364 ... 0.267249
16 71.268228 1.688296 0.149827 ... 0.272076
17 74.732375 0.995570 -0.057076 ... 0.173023
18 75.005645 0.909686 4.142686 ... 0.251494
5 70.779953 4.773098 -1.899860 ... 0.773255
14 74.857807 2.759146 -2.745917 ... 0.388765
2 72.958267 2.394267 -0.230000 ... 0.206093
7 73.129881 1.990473 -0.959923 ... 0.223915
6 73.894805 2.227882 0.547178 ... 0.174199
3 72.129244 2.513562 -2.145414 ... 0.180008
MEAN(diameter_RL) STD(diameter_RL) MEAN(eccentricity) \
1 11.899994 0.348936 0.689786
4 11.935064 0.352203 0.692630
0 11.942165 0.386189 0.692055
8 13.469831 0.903365 0.749762
10 13.618790 0.856929 0.751709
15 13.567128 0.933170 0.758917
12 13.510144 0.754180 0.750687
9 11.618506 0.249626 0.719638
13 11.669006 0.227977 0.728585
11 11.246244 0.328627 0.702012
16 11.275181 0.260300 0.698106
17 12.063074 0.345358 0.754853
18 11.967497 0.381923 0.743363
5 12.190368 0.565430 0.779750
14 12.401970 0.406430 0.775455
2 12.298752 0.455764 0.786437
7 12.384761 0.445033 0.792261
6 12.449794 0.470167 0.792112
3 12.327045 0.417297 0.794967
STD(eccentricity) MEAN(orientation) STD(orientation) MEAN(solidity) \
1 0.032309 3.342223 1.895299 0.973535
4 0.031759 2.725679 1.980338 0.974296
0 0.028034 4.826952 2.124976 0.973148
8 0.061652 3.007144 1.340842 0.970252
10 0.060540 2.065212 1.229055 0.970512
15 0.066758 1.366771 1.115320 0.969417
12 0.055164 1.432686 1.105488 0.970806
9 0.026723 1.350991 0.866047 0.970433
13 0.027002 1.021736 0.860224 0.971586
11 0.046127 1.260142 1.145153 0.970805
16 0.041606 1.752418 1.216747 0.975077
17 0.027804 2.550164 1.247343 0.967420
18 0.040588 1.571435 1.604254 0.972454
5 0.071128 3.074997 1.954591 0.956469
14 0.041603 2.156050 1.223840 0.966862
2 0.025628 0.972269 0.813403 0.972373
7 0.026887 1.640786 1.149530 0.970194
6 0.023507 1.604021 1.084022 0.967781
3 0.019853 1.783156 0.920410 0.969491
STD(solidity) SUM(length)
1 0.009511 33.716889
4 0.007769 33.951292
0 0.006615 34.526392
8 0.010245 31.142010
10 0.010239 30.640014
15 0.010025 29.350071
12 0.009661 28.757132
9 0.008960 29.966024
13 0.007557 29.619905
11 0.008657 29.249095
16 0.009043 30.022830
17 0.011174 29.705806
18 0.008886 28.928858
5 0.019386 31.359579
14 0.013124 31.380837
2 0.010028 30.494727
7 0.011049 30.874411
6 0.010371 29.962644
3 0.009872 30.558270
[19 rows x 24 columns], 'GMT2w': Subject Session Timestamp \
0 1 1 2021-06-09 23:27:57
5 1 2 2021-06-09 23:28:30
1 1 3 2021-06-09 23:28:01
8 2 1 2021-06-09 23:44:35
9 2 2 2021-06-09 23:45:01
14 2 3 2021-06-09 23:53:03
11 2 4 2021-06-09 23:45:18
10 3 1 2021-06-09 23:45:12
13 3 2 2021-06-09 23:45:45
12 3 3 2021-06-09 23:45:36
15 3 4 2021-06-09 23:57:39
16 4 2 2021-06-09 23:58:05
17 4 3 2021-06-09 23:58:21
4 5 1 2021-06-09 23:28:25
2 6 1 2021-06-09 23:28:13
7 6 2 2021-06-09 23:28:34
6 6 3 2021-06-09 23:28:31
3 6 4 2021-06-09 23:28:22
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 2:9 3:4
5 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
1 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
8 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
9 /Users/julien/temp/neuromod/data_processed/sub... 3:9 3:4
14 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
11 /Users/julien/temp/neuromod/data_processed/sub... 3:9 3:4
10 /Users/julien/temp/neuromod/data_processed/sub... 4:9 3:4
13 /Users/julien/temp/neuromod/data_processed/sub... 5:10 3:4
12 /Users/julien/temp/neuromod/data_processed/sub... 5:10 3:4
15 /Users/julien/temp/neuromod/data_processed/sub... 4:9 3:4
16 /Users/julien/temp/neuromod/data_processed/sub... 4:9 3:4
17 /Users/julien/temp/neuromod/data_processed/sub... 5:10 3:4
4 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
2 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
7 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
6 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
3 /Users/julien/temp/neuromod/data_processed/sub... 4:10 3:4
MEAN(area) STD(area) MEAN(angle_AP) ... STD(diameter_AP) \
0 15.781250 1.371800 0.0 ... 0.283857
5 15.928571 2.034147 0.0 ... 0.312646
1 17.000000 1.752549 0.0 ... 0.437912
8 19.821429 1.360897 0.0 ... 0.417456
9 20.000000 1.077365 0.0 ... 0.342271
14 19.214286 1.605952 0.0 ... 0.487494
11 20.464286 1.397885 0.0 ... 0.322935
10 18.208333 1.933351 0.0 ... 0.218711
13 17.333333 1.624466 0.0 ... 0.157746
12 16.625000 2.452677 0.0 ... 0.185884
15 16.958333 1.758412 0.0 ... 0.238859
16 17.041667 1.417279 0.0 ... 0.193646
17 17.333332 1.455354 0.0 ... 0.309761
4 16.214286 1.848883 0.0 ... 0.490131
2 16.642857 3.600241 0.0 ... 0.556421
7 17.392857 2.182958 0.0 ... 0.433186
6 16.321428 2.020936 0.0 ... 0.451914
3 16.535714 2.707228 0.0 ... 0.719459
MEAN(diameter_RL) STD(diameter_RL) MEAN(eccentricity) \
0 9.157261 0.632701 0.760794
5 8.912826 0.518961 0.755229
1 9.105736 0.577677 0.742294
8 11.544729 0.413976 0.882456
9 11.842302 0.579720 0.879404
14 11.589557 0.509289 0.880191
11 11.748837 0.339294 0.880092
10 9.713868 0.912814 0.809431
13 9.552361 0.850671 0.803472
12 9.541168 0.905707 0.803929
15 9.512255 0.787789 0.809049
16 9.258316 0.625445 0.800148
17 9.310330 0.966440 0.792127
4 9.916864 0.663039 0.848935
2 10.865812 0.972017 0.875254
7 11.029238 0.908874 0.877292
6 10.450533 0.889613 0.879650
3 10.447901 0.631897 0.896789
STD(eccentricity) MEAN(orientation) STD(orientation) MEAN(solidity) \
0 0.065413 9.239814 4.915181 0.398420
5 0.050143 7.501914 6.651370 0.402462
1 0.076859 8.999431 5.426012 0.412780
8 0.015014 2.491855 1.419888 0.400532
9 0.021123 2.516891 2.068491 0.380244
14 0.021772 3.755927 2.144876 0.392944
11 0.017030 1.848681 1.410178 0.390731
10 0.046939 2.111163 1.302024 0.441700
13 0.048638 3.743699 2.736344 0.431054
12 0.050888 3.033851 3.309783 0.423130
15 0.050811 2.475007 0.736044 0.427416
16 0.040699 3.309946 1.876603 0.438293
17 0.067271 5.133278 3.005962 0.452724
4 0.047865 3.056269 2.330227 0.420649
2 0.043939 1.272704 0.738812 0.392086
7 0.037499 1.582275 1.103783 0.406786
6 0.036167 1.582814 1.583200 0.423449
3 0.037479 3.565542 1.894078 0.461639
STD(solidity) SUM(length)
0 0.017171 40.000000
5 0.017327 34.999983
1 0.019752 35.000010
8 0.022981 35.000033
9 0.013678 34.999980
14 0.018671 35.000000
11 0.011656 35.000033
10 0.014227 29.999989
13 0.016436 30.000037
12 0.022843 29.999986
15 0.020870 29.999991
16 0.010648 30.000011
17 0.024747 30.000011
4 0.020092 34.999977
2 0.054614 34.999983
7 0.024975 34.999990
6 0.020716 35.000017
3 0.037115 35.000003
[18 rows x 24 columns]}
White matter qMRI#
data_type = 'qmri'
release_version = 'latest'
dataset = Data(data_type)
dataset.download(release_version)
Archive: spinalcord_results.zip
inflating: data/qmri/DWI_RD.csv
inflating: data/qmri/DWI_FA.csv
inflating: data/qmri/csa-SC_T2w.csv
inflating: data/qmri/DWI_MD.csv
inflating: data/qmri/MTR.csv
inflating: data/qmri/MTsat.csv
inflating: data/qmri/csa-GM_T2s.csv
inflating: data/qmri/csa-SC_T1w.csv
inflating: data/qmri/._csa-SC_T1w.csv
inflating: data/qmri/T1.csv
--2022-06-14 00:05:37-- https://github.com/courtois-neuromod/anat-processing/releases/download//r20210610/spinalcord_results.zip
Resolving github.com (github.com)... 140.82.114.4
Connecting to github.com (github.com)|140.82.114.4|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/333825187/9e444c00-c9e2-11eb-880c-f9aa2a43f100?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220614%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220614T000536Z&X-Amz-Expires=300&X-Amz-Signature=238f36051ea01c3f5e90af0eedd912c03f7f4e0280c8642b8f16eed6fa829b86&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=333825187&response-content-disposition=attachment%3B%20filename%3Dspinalcord_results.zip&response-content-type=application%2Foctet-stream [following]
--2022-06-14 00:05:37-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/333825187/9e444c00-c9e2-11eb-880c-f9aa2a43f100?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220614%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220614T000536Z&X-Amz-Expires=300&X-Amz-Signature=238f36051ea01c3f5e90af0eedd912c03f7f4e0280c8642b8f16eed6fa829b86&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=333825187&response-content-disposition=attachment%3B%20filename%3Dspinalcord_results.zip&response-content-type=application%2Foctet-stream
Resolving objects.githubusercontent.com (objects.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.110.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 19324 (19K) [application/octet-stream]
Saving to: ‘spinalcord_results.zip’
0K .......... ........ 100% 32.1M=0.001s
2022-06-14 00:05:37 (32.1 MB/s) - ‘spinalcord_results.zip’ saved [19324/19324]
dataset.load()
fig_spine = Plot(dataset, plot_name = 'spine-3')
fig_spine.title = 'Spinal cord qMRI microstructure'
matrix = dataset.extract_data('qmri')
print(matrix)
{'DWI_FA': Subject Session Timestamp \
0 1 1 2021-06-09 23:30:45
5 1 2 2021-06-09 23:31:03
1 1 3 2021-06-09 23:30:51
8 2 1 2021-06-09 23:47:07
9 2 2 2021-06-09 23:47:41
14 2 3 2021-06-09 23:54:55
11 2 4 2021-06-09 23:48:00
10 3 1 2021-06-09 23:47:55
13 3 2 2021-06-09 23:48:17
12 3 3 2021-06-09 23:48:06
15 3 4 2021-06-09 23:59:29
16 4 2 2021-06-09 23:59:50
17 4 3 2021-06-10 00:00:01
4 5 1 2021-06-09 23:30:58
2 6 1 2021-06-09 23:30:54
7 6 2 2021-06-09 23:31:06
6 6 3 2021-06-09 23:31:04
3 6 4 2021-06-09 23:30:54
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 0:12 2:5
5 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
1 /Users/julien/temp/neuromod/data_processed/sub... 0:13 2:5
8 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
9 /Users/julien/temp/neuromod/data_processed/sub... 0:12 2:5
14 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
11 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
10 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
13 /Users/julien/temp/neuromod/data_processed/sub... 2:12 2:5
12 /Users/julien/temp/neuromod/data_processed/sub... 2:13 2:5
15 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
16 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
17 /Users/julien/temp/neuromod/data_processed/sub... 2:12 2:5
4 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
2 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
7 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
6 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
3 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
Label Size [vox] WA() STD()
0 white matter 904.189345 0.631039 0.140065
5 white matter 964.007476 0.644994 0.138715
1 white matter 1039.275888 0.605202 0.148103
8 white matter 1137.937444 0.799384 0.172222
9 white matter 1309.761521 0.629431 0.168256
14 white matter 1153.703857 0.659575 0.162677
11 white matter 1176.168913 0.717280 0.167405
10 white matter 768.628748 0.726278 0.148227
13 white matter 749.162398 0.711276 0.150530
12 white matter 690.874778 0.478779 0.331780
15 white matter 778.110046 0.811363 0.142352
16 white matter 727.057663 0.732361 0.157148
17 white matter 719.404200 0.722414 0.150972
4 white matter 952.717593 0.698379 0.169484
2 white matter 775.946751 0.664973 0.159732
7 white matter 829.913278 0.688663 0.136988
6 white matter 757.399533 0.653336 0.154299
3 white matter 765.939159 0.647316 0.217450 , 'DWI_MD': Subject Session Timestamp \
0 1 1 2021-06-09 23:30:46
5 1 2 2021-06-09 23:31:05
1 1 3 2021-06-09 23:30:52
8 2 1 2021-06-09 23:47:09
9 2 2 2021-06-09 23:47:42
14 2 3 2021-06-09 23:54:56
11 2 4 2021-06-09 23:48:01
10 3 1 2021-06-09 23:47:57
13 3 2 2021-06-09 23:48:18
12 3 3 2021-06-09 23:48:07
15 3 4 2021-06-09 23:59:30
16 4 2 2021-06-09 23:59:51
17 4 3 2021-06-10 00:00:02
4 5 1 2021-06-09 23:30:59
2 6 1 2021-06-09 23:30:55
7 6 2 2021-06-09 23:31:07
6 6 3 2021-06-09 23:31:05
3 6 4 2021-06-09 23:30:55
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 0:12 2:5
5 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
1 /Users/julien/temp/neuromod/data_processed/sub... 0:13 2:5
8 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
9 /Users/julien/temp/neuromod/data_processed/sub... 0:12 2:5
14 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
11 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
10 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
13 /Users/julien/temp/neuromod/data_processed/sub... 2:12 2:5
12 /Users/julien/temp/neuromod/data_processed/sub... 2:13 2:5
15 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
16 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
17 /Users/julien/temp/neuromod/data_processed/sub... 2:12 2:5
4 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
2 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
7 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
6 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
3 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
Label Size [vox] WA() STD()
0 white matter 904.189345 0.001014 0.000219
5 white matter 964.007476 0.001018 0.000229
1 white matter 1039.275888 0.001026 0.000231
8 white matter 1137.937444 0.001401 0.000837
9 white matter 1309.761521 0.000976 0.000264
14 white matter 1153.703857 0.000912 0.000219
11 white matter 1176.168913 0.000815 0.000253
10 white matter 768.628748 0.000961 0.000256
13 white matter 749.162398 0.000991 0.000267
12 white matter 690.874778 0.000669 0.000551
15 white matter 778.110046 0.000894 0.000252
16 white matter 727.057663 0.000965 0.000282
17 white matter 719.404200 0.001035 0.000284
4 white matter 952.717593 0.000977 0.000306
2 white matter 775.946751 0.001055 0.000249
7 white matter 829.913278 0.001012 0.000252
6 white matter 757.399533 0.001018 0.000244
3 white matter 765.939159 0.000917 0.000348 , 'DWI_RD': Subject Session Timestamp \
0 1 1 2021-06-09 23:30:47
5 1 2 2021-06-09 23:31:06
1 1 3 2021-06-09 23:30:53
8 2 1 2021-06-09 23:47:10
9 2 2 2021-06-09 23:47:43
14 2 3 2021-06-09 23:54:57
11 2 4 2021-06-09 23:48:02
10 3 1 2021-06-09 23:47:59
13 3 2 2021-06-09 23:48:19
12 3 3 2021-06-09 23:48:08
15 3 4 2021-06-09 23:59:31
16 4 2 2021-06-09 23:59:52
17 4 3 2021-06-10 00:00:02
4 5 1 2021-06-09 23:31:00
2 6 1 2021-06-09 23:30:56
7 6 2 2021-06-09 23:31:08
6 6 3 2021-06-09 23:31:06
3 6 4 2021-06-09 23:30:57
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 0:12 2:5
5 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
1 /Users/julien/temp/neuromod/data_processed/sub... 0:13 2:5
8 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
9 /Users/julien/temp/neuromod/data_processed/sub... 0:12 2:5
14 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
11 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
10 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
13 /Users/julien/temp/neuromod/data_processed/sub... 2:12 2:5
12 /Users/julien/temp/neuromod/data_processed/sub... 2:13 2:5
15 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
16 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
17 /Users/julien/temp/neuromod/data_processed/sub... 2:12 2:5
4 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
2 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
7 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
6 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
3 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
Label Size [vox] WA() STD()
0 white matter 904.189345 0.000594 0.000228
5 white matter 964.007476 0.000596 0.000245
1 white matter 1039.275888 0.000627 0.000251
8 white matter 1137.937444 0.000511 0.000302
9 white matter 1309.761521 0.000570 0.000273
14 white matter 1153.703857 0.000514 0.000236
11 white matter 1176.168913 0.000414 0.000264
10 white matter 768.628748 0.000467 0.000282
13 white matter 749.162398 0.000503 0.000295
12 white matter 690.874778 0.000407 0.000431
15 white matter 778.110046 0.000339 0.000270
16 white matter 727.057663 0.000469 0.000321
17 white matter 719.404200 0.000512 0.000318
4 white matter 952.717593 0.000505 0.000271
2 white matter 775.946751 0.000578 0.000283
7 white matter 829.913278 0.000532 0.000249
6 white matter 757.399533 0.000573 0.000268
3 white matter 765.939159 0.000494 0.000287 , 'MTR': Subject Session Timestamp \
0 1 1 2021-06-09 23:26:40
5 1 2 2021-06-09 23:26:51
1 1 3 2021-06-09 23:26:41
8 2 1 2021-06-09 23:43:47
9 2 2 2021-06-09 23:43:58
15 2 3 2021-06-09 23:52:31
11 2 4 2021-06-09 23:44:09
10 3 1 2021-06-09 23:44:06
13 3 2 2021-06-09 23:44:37
12 3 3 2021-06-09 23:44:25
16 3 4 2021-06-09 23:57:07
17 4 2 2021-06-09 23:57:33
18 4 3 2021-06-09 23:57:45
4 5 1 2021-06-09 23:26:48
14 5 2 2021-06-09 23:47:18
2 6 1 2021-06-09 23:26:44
7 6 2 2021-06-09 23:26:56
6 6 3 2021-06-09 23:26:53
3 6 4 2021-06-09 23:26:46
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
18 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 0:13 2:5
5 /Users/julien/temp/neuromod/data_processed/sub... 2:15 2:5
1 /Users/julien/temp/neuromod/data_processed/sub... 3:16 2:5
8 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
9 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
15 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
11 /Users/julien/temp/neuromod/data_processed/sub... 0:11 2:5
10 /Users/julien/temp/neuromod/data_processed/sub... 5:16 2:5
13 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
12 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
16 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
17 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
18 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
4 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
14 /Users/julien/temp/neuromod/data_processed/sub... 85:156 2:5
2 /Users/julien/temp/neuromod/data_processed/sub... 4:16 2:5
7 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
6 /Users/julien/temp/neuromod/data_processed/sub... 3:15 2:5
3 /Users/julien/temp/neuromod/data_processed/sub... 5:17 2:5
Label Size [vox] WA() STD()
0 white matter 1046.054370 44.209522 5.546168
5 white matter 1018.908949 50.699601 3.897717
1 white matter 1041.891840 45.682771 4.558806
8 white matter 1115.519208 42.679169 13.292257
9 white matter 1195.521827 37.822614 8.048927
15 white matter 1117.192721 44.258456 8.416986
11 white matter 1056.832881 40.766881 10.644967
10 white matter 804.568625 47.497072 4.550398
13 white matter 746.026673 47.810683 5.161154
12 white matter 777.814473 47.573785 4.537513
16 white matter 720.962692 47.197086 5.450475
17 white matter 731.762283 46.773349 4.927121
18 white matter 812.075778 47.797203 4.550833
4 white matter 968.164278 46.802710 9.793295
14 white matter 826.424784 44.272382 7.513139
2 white matter 847.472701 47.150662 4.334012
7 white matter 790.522420 46.347500 6.902517
6 white matter 845.598555 48.022072 6.061917
3 white matter 856.011955 45.055435 5.637046 , 'MTSat': Subject Session Timestamp \
0 1 1 2021-06-09 23:26:42
5 1 2 2021-06-09 23:26:52
1 1 3 2021-06-09 23:26:42
8 2 1 2021-06-09 23:43:48
9 2 2 2021-06-09 23:43:59
15 2 3 2021-06-09 23:52:32
11 2 4 2021-06-09 23:44:10
10 3 1 2021-06-09 23:44:07
13 3 2 2021-06-09 23:44:39
12 3 3 2021-06-09 23:44:27
16 3 4 2021-06-09 23:57:08
17 4 2 2021-06-09 23:57:35
18 4 3 2021-06-09 23:57:46
4 5 1 2021-06-09 23:26:49
14 5 2 2021-06-09 23:47:19
2 6 1 2021-06-09 23:26:45
7 6 2 2021-06-09 23:26:57
6 6 3 2021-06-09 23:26:54
3 6 4 2021-06-09 23:26:48
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
18 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 0:13 2:5
5 /Users/julien/temp/neuromod/data_processed/sub... 2:15 2:5
1 /Users/julien/temp/neuromod/data_processed/sub... 3:16 2:5
8 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
9 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
15 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
11 /Users/julien/temp/neuromod/data_processed/sub... 0:11 2:5
10 /Users/julien/temp/neuromod/data_processed/sub... 5:16 2:5
13 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
12 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
16 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
17 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
18 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
4 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
14 /Users/julien/temp/neuromod/data_processed/sub... 85:156 2:5
2 /Users/julien/temp/neuromod/data_processed/sub... 4:16 2:5
7 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
6 /Users/julien/temp/neuromod/data_processed/sub... 3:15 2:5
3 /Users/julien/temp/neuromod/data_processed/sub... 5:17 2:5
Label Size [vox] WA() STD()
0 white matter 1046.054370 3.499266 1.451179
5 white matter 1018.908949 3.806936 0.718392
1 white matter 1041.891840 3.357581 0.632779
8 white matter 1115.519208 3.855797 3.086657
9 white matter 1195.521827 2.846363 0.918702
15 white matter 1117.192721 4.075625 1.419094
11 white matter 1056.832881 3.373417 1.332627
10 white matter 804.568625 3.724485 0.733619
13 white matter 746.026673 3.704875 0.788456
12 white matter 777.814473 3.589619 0.696303
16 white matter 720.962692 3.442284 0.677691
17 white matter 731.762283 3.539466 0.728657
18 white matter 812.075778 3.637116 0.735389
4 white matter 968.164278 3.576086 1.190436
14 white matter 826.424784 3.313316 1.291342
2 white matter 847.472701 3.739600 0.735669
7 white matter 790.522420 3.573418 0.871603
6 white matter 845.598555 4.034849 1.202511
3 white matter 856.011955 3.467103 0.859480 , 'T1': Subject Session Timestamp \
0 1 1 2021-06-09 23:26:43
5 1 2 2021-06-09 23:26:53
1 1 3 2021-06-09 23:26:43
8 2 1 2021-06-09 23:43:49
9 2 2 2021-06-09 23:44:00
15 2 3 2021-06-09 23:52:33
11 2 4 2021-06-09 23:44:11
10 3 1 2021-06-09 23:44:08
13 3 2 2021-06-09 23:44:41
12 3 3 2021-06-09 23:44:28
16 3 4 2021-06-09 23:57:09
17 4 2 2021-06-09 23:57:36
18 4 3 2021-06-09 23:57:46
4 5 1 2021-06-09 23:26:50
14 5 2 2021-06-09 23:47:20
2 6 1 2021-06-09 23:26:46
7 6 2 2021-06-09 23:26:58
6 6 3 2021-06-09 23:26:55
3 6 4 2021-06-09 23:26:49
SCT Version \
0 git-jca/3413-run-batch-session-c41958db922273a...
5 git-jca/3413-run-batch-session-c41958db922273a...
1 git-jca/3413-run-batch-session-c41958db922273a...
8 git-jca/3413-run-batch-session-c41958db922273a...
9 git-jca/3413-run-batch-session-c41958db922273a...
15 git-jca/3413-run-batch-session-c41958db922273a...
11 git-jca/3413-run-batch-session-c41958db922273a...
10 git-jca/3413-run-batch-session-c41958db922273a...
13 git-jca/3413-run-batch-session-c41958db922273a...
12 git-jca/3413-run-batch-session-c41958db922273a...
16 git-jca/3413-run-batch-session-c41958db922273a...
17 git-jca/3413-run-batch-session-c41958db922273a...
18 git-jca/3413-run-batch-session-c41958db922273a...
4 git-jca/3413-run-batch-session-c41958db922273a...
14 git-jca/3413-run-batch-session-c41958db922273a...
2 git-jca/3413-run-batch-session-c41958db922273a...
7 git-jca/3413-run-batch-session-c41958db922273a...
6 git-jca/3413-run-batch-session-c41958db922273a...
3 git-jca/3413-run-batch-session-c41958db922273a...
Filename Slice (I->S) VertLevel \
0 /Users/julien/temp/neuromod/data_processed/sub... 0:13 2:5
5 /Users/julien/temp/neuromod/data_processed/sub... 2:15 2:5
1 /Users/julien/temp/neuromod/data_processed/sub... 3:16 2:5
8 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
9 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
15 /Users/julien/temp/neuromod/data_processed/sub... 1:12 2:5
11 /Users/julien/temp/neuromod/data_processed/sub... 0:11 2:5
10 /Users/julien/temp/neuromod/data_processed/sub... 5:16 2:5
13 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
12 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
16 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
17 /Users/julien/temp/neuromod/data_processed/sub... 5:15 2:5
18 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
4 /Users/julien/temp/neuromod/data_processed/sub... 1:13 2:5
14 /Users/julien/temp/neuromod/data_processed/sub... 85:156 2:5
2 /Users/julien/temp/neuromod/data_processed/sub... 4:16 2:5
7 /Users/julien/temp/neuromod/data_processed/sub... 4:15 2:5
6 /Users/julien/temp/neuromod/data_processed/sub... 3:15 2:5
3 /Users/julien/temp/neuromod/data_processed/sub... 5:17 2:5
Label Size [vox] WA() STD()
0 white matter 1046.054370 0.001292 0.000386
5 white matter 1018.908949 0.001484 0.000239
1 white matter 1041.891840 0.001337 0.000263
8 white matter 1115.519208 0.001139 0.000765
9 white matter 1195.521827 0.001123 0.000304
15 white matter 1117.192721 0.001036 0.000347
11 white matter 1056.832881 0.001098 0.000357
10 white matter 804.568625 0.001277 0.000228
13 white matter 746.026673 0.001316 0.000233
12 white matter 777.814473 0.001354 0.000246
16 white matter 720.962692 0.001415 0.000263
17 white matter 731.762283 0.001323 0.000242
18 white matter 812.075778 0.001350 0.000258
4 white matter 968.164278 0.001627 0.008498
14 white matter 826.424784 0.001381 0.000426
2 white matter 847.472701 0.001240 0.000209
7 white matter 790.522420 0.001302 0.000295
6 white matter 845.598555 0.001223 0.000280
3 white matter 856.011955 0.001256 0.000262 }
{'DWI_FA': [[0.6310385280039796, 0.6449939742310774, 0.6052019869249001, 0.6052019869249001], [0.799384499868077, 0.6294310187889507, 0.6595746693454234, 0.7172795640397259], [0.7262775593497328, 0.7112761015883302, 0.4787790887981428, 0.8113632640960852], [0.8113632640960852, 0.7323609952753036, 0.7224137607034387, 0.7224137607034387], [0.6983788722936425, 0.6983788722936425, 0.6983788722936425, 0.6983788722936425], [0.6649732448837092, 0.688663199247152, 0.6533355425960395, 0.6473157034113586]], 'DWI_MD': [[0.0010138856451204, 0.0010177543993774, 0.0010257196398529, 0.0010257196398529], [0.0014014718331852, 0.0009761721717434, 0.0009117604540341, 0.000815311519069], [0.0009605911746559, 0.0009906206359397, 0.0006694445137909, 0.0008935883019168], [0.0008935883019168, 0.0009645148099392, 0.0010351902433702, 0.0010351902433702], [0.0009774778167169, 0.0009774778167169, 0.0009774778167169, 0.0009774778167169], [0.0010551867192628, 0.001012210010244, 0.0010180580331023, 0.0009165329349018]], 'DWI_RD': [[0.0005942976466395, 0.0005960152894725, 0.00062691302888, 0.00062691302888], [0.0005112709262059, 0.0005704880839017, 0.0005137069084603, 0.0004143742226968], [0.0004672565333558, 0.0005026007210642, 0.0004066867643462, 0.0003393328073422], [0.0003393328073422, 0.0004692023931709, 0.0005123971557951, 0.0005123971557951], [0.0005045102052002, 0.0005045102052002, 0.0005045102052002, 0.0005045102052002], [0.000577999230138, 0.0005316527869437, 0.0005729917043376, 0.0004937373474434]], 'MTR': [[44.209522055240505, 50.69960144846205, 45.682771475180594, 45.682771475180594], [42.67916913302598, 37.82261433907465, 44.258456219263856, 40.76688074907387], [47.497071935829645, 47.81068337186637, 47.57378502229639, 47.19708621549288], [47.19708621549288, 46.77334882206762, 47.79720317144616, 47.79720317144616], [46.802709566692286, 44.27238222794652, 44.27238222794652, 44.27238222794652], [47.15066198433709, 46.34750036374999, 48.02207246120396, 45.055435263858136]], 'MTSat': [[3.499265814909754, 3.80693641422522, 3.3575814030216278, 3.3575814030216278], [3.8557974910487354, 2.846363452702357, 4.075625383910599, 3.373417235607917], [3.7244854393057487, 3.704874827322425, 3.589619356583784, 3.442284461661099], [3.442284461661099, 3.539465912889603, 3.637115993665185, 3.637115993665185], [3.576085608246151, 3.313315766455653, 3.313315766455653, 3.313315766455653], [3.739600198542477, 3.5734180021212527, 4.034849342197791, 3.4671027317089025]], 'T1': [[0.00129223798176, 0.0014841752890748, 0.0013368451408746, 0.0013368451408746], [0.0011388416775548, 0.001123306492997, 0.001036083901409, 0.0010984101977734], [0.0012773608831078, 0.0013156767241556, 0.0013540267986507, 0.0014153027257222], [0.0014153027257222, 0.0013227935588819, 0.0013498186815148, 0.0013498186815148], [0.0016271384699499, 0.0013811508940738, 0.0013811508940738, 0.0013811508940738], [0.0012395962831586, 0.0013018090136284, 0.0012232588411571, 0.0012559476536657]]}
# If you're running this notebook in a Jupyter Notebook (eg, on MyBinder), change 'jupyter-book' to 'notebook'
#fig_spine.display('jupyter-book', tissue = 'qMRI')